I don't think we said that proteins are formed, but rather when head is formed, that certain proteins get used up in the process. If you don't believe me, you might instead believe Dr. Charles Bamforth. He was on Brew Strong a couple times and I believe he mentions it during one of the shows. Also, he has written a lot on head formation and retention. Here is a link to something you can read for free:
http://www.scientificsocieties.org/jib/ ... 06-269.pdfWhat happens is that to form the bubbles, some of the proteins involved need to unfold, which is non-reversible in this case.
As for shaking, I think when we were talking about this, we were just comparing the relative merits of methods and just listing off anything we could think of. It isn't something to worry about. You'd have to shake the shit out of something for a very long time to see any difference in your beer. However, just about any foaming will use up these proteins when bubbles form at the surface. I don't think people need to worry too much about it. Aerating with an air stone should show this effect faster, but again, it would take excessively long aeration times to have a visible impact. You don't need to aerate more than 10 minutes in most cases. Foaming away for an hour is just a waste.
If you believe me now, maybe you could follow up everywhere else you posted this question.
