I've seen both the Carbonic acid from over-Carbonation as AJ points out as well all of the "brightening" effects that ThatGuy points out.
9psi takes some damn cold temps to over carb an IPA, though. What is the kegerator set at? I've always liked 2.4 volumes, 11 psi at 40F for my medium carbonated beers. See
http://www.kegerators.com/carbonation-table.php for help with this.
Other things to consider include backing down the IBUs (HERESY!!!), changing to lower cohumulone hops for bittering, and maybe just throwing it into a brite tank with a cold crash before kegging. All of these 3 will require re-dialing in the recipe once you go with them, but that seems to be the intent here, no?
HTH-
Oh, thought of one other thing.... Gotta ask, are you sure it is limited to simply increased percieved bitterness? Is it possible that this is sanitation related? Counter fill a bottle when the issue happens. Put it aside at room temp and leave it alone for a couple weeks. chill back down to serving temps and see if there is a pronounced infection.