I'd like to offer an alternative to mike's method.
I too filter basically every single beer I make. I don't use the filter pads though, I use a 10inch household water filter housing and a 1 micron absolute pleated polyester filter cartridge. The original set-up cost is higher than if you use the hexagonal filter and pads.. but the cartridges are washable and good for upwards of 1000L of beer.
In general, I filter directly from my primary fermenter (I don't use a secondary) via gravity through the filter into a keg - but sometimes I will filter from keg to keg, it can be done via gravity, but I usually push it with a bit of C02 pressure.
Here's the filter unit. Note the red button in the top, which allows you to vent any gas that gets trapped in the cartridge.

I will fill a keg with starsan, then push the startsan out with C02, through the filter. This sanitises the keg, sanitises the filter and purges both the keg and filter of all oxygen. I usually push the starsan into a spare keg... then that one is ready to go for next time and I don't waste the starsan.
Then its attach filter to primary and filter into the keg via gravity - this is not my actual system, I don't have a photo, but it is in nearly every way identical

or occasionally If I have transfered a beer to a corny for aging, I will filter from keg to keg

And of course... the money shot. Results! I add PVPP to the fermentor before filtering and with the 1 micron I get diamond bright beer with no chill haze, every single time. This is Denny Con's Rye IIPA and it was in the primary fermentor 2 days ago. Filtering does much of the work of aging and lagering and gets the beer from grain to brain much more speedily (a week or so will still improve this beer though)

Hope that gives a little more info to any potential filterers out there.
Cheers
Thirsty